Extramural:
Modified the RLS pg_hba.conf permissions for databases lrc1000 and rli1000.
Tested RLS configuration
ncphi:/usr/local/globus-4.0.5/bin # ./globus-rls-admin -p rls://ncphi.phgrid.netping rls://ncphi.phgrid.net: 0 seconds
Updated configuration on lab 1003 to allow transfers between Dallas and Tarrant servers
Tested Java Cog Kit Desktop. The Java Cog Kit Desktop includes: GridFTP Gui, Grid Monitor, Workflow Tool, Grid Shell, Image Viewer, Directory Browser
(www.cogkit.org)
Monday, March 31, 2008
Friday, March 28, 2008
Daily Lab / POC Activities
Extramural:
t_attribute | table
t_date_attr | table
t_flt_attr | table
t_int_attr | table
t_lfn | table
t_map | table
t_pfn | table
t_rli | table
t_rlipartition | table
t_str_attr | table
Database: rli1000
t_lfn | table
t_lrc | table
t_map | table
t_rli | table
t_rlipartition | table
t_sender | table
- Researched GridSQL
- Worked on troubleshooting RLS issue (Trust configuration is the possible root cause)
- Updated RLS Postgresql on lab1002 to include:
t_attribute | table
t_date_attr | table
t_flt_attr | table
t_int_attr | table
t_lfn | table
t_map | table
t_pfn | table
t_rli | table
t_rlipartition | table
t_str_attr | table
Database: rli1000
t_lfn | table
t_lrc | table
t_map | table
t_rli | table
t_rlipartition | table
t_sender | table
Thursday, March 27, 2008
Daily Lab / POC Activities
Extramural:
connect(rls://gump.somedomain.net): globus_rls_client: Globus I/O error: globus_xio: An end of file occurred
gump:~ # /usr/local/globus-4.0.5/bin/globus-rls-admin -p rlsn://gump.somedomain.net
connect(rlsn://gump.somedomain.net): globus_rls_client: IO timeout: globus_io_register_read() timed out after 30 seconds
- Installed and configured RLS on lab1002. RLS has been configured to use a Postgresql Database.
- Currently working on solving the following RLS issues:
connect(rls://gump.somedomain.net): globus_rls_client: Globus I/O error: globus_xio: An end of file occurred
gump:~ # /usr/local/globus-4.0.5/bin/globus-rls-admin -p rlsn://gump.somedomain.net
connect(rlsn://gump.somedomain.net): globus_rls_client: IO timeout: globus_io_register_read() timed out after 30 seconds
- Peter is currently investigating methods for extending the MonaLisa pluggable component code.
Wednesday, March 26, 2008
Daily Lab / POC Activities
- Demonstrated grid functionality to the Project Management Office
- Provided grid documentation to Peter and instructed him on accessing the grid
- Pittsburgh node is still having time sync issues. (Check skew error) Jeremy is working to correct the issue.
- Peter is currently researching extending MonaLisa and WS MDS functionality
Demo Commands:
Login:
grid-proxy-init -verify
3rd Party Transfer from Dallas
globus-url-copy -dbg gsiftp://gump.somedomain.net/home/ken/gridtesting gsiftp://tarrant.somedomain.net/tmp/atl-file
Put
globus-url-copy -dbg file:///home/ken/gridtesting gsiftp://tarrant.somedomain.net/tmp/atl-file
RFT of HL7 file from Atlanta to Tarrant
rft -h gump.somedomain.net -f /tmp/rft.xfr
Submit a Job to WSGRAM:
globusrun-ws -submit -c /bin/rm /tmp/hello*
globusrun-ws -submit -c /bin/true
echo $?
globusrun-ws -submit -c /bin/false
WebMDS Services (Show RFT Status)
http://gump.somedomain.net:8080/webmds/
Daily Lab / POC Activities
Extramural:
- Worked on troubleshooting the Dallas RFT issue.
- Assisted Columbia with installing and configuring Globus
- Spoke with Wayne about installing the JHUAPL node
- Worked on Atlanta node RLS configuration.
Monday, March 24, 2008
Daily Lab / POC Activities
Extramural:
postgresql-libs-8.1.9-1.2.i586.rpm
postgresql-server-8.1.9-1.2.i586.rpm
libiodbc-3.52.5-1.i386.rpm
libiodbc-devel-3.52.5-1.i386.rpm
bubba@gump:~> counter-client -s https://gump.somedomain.net:8443/wsrf/services/CounterService
Got notification with value: 3
Counter has value: 3
Got notification with value: 13
bubba@gump:~>
- Researched RLS
- Configured RLS on lab 1002 node
- Installed the following on the Dallas server:
postgresql-libs-8.1.9-1.2.i586.rpm
postgresql-server-8.1.9-1.2.i586.rpm
libiodbc-3.52.5-1.i386.rpm
libiodbc-devel-3.52.5-1.i386.rpm
- Configured Globus Container on Dallas node
bubba@gump:~> counter-client -s https://gump.somedomain.net:8443/wsrf/services/CounterService
Got notification with value: 3
Counter has value: 3
Got notification with value: 13
bubba@gump:~>
- Configured RFT on Dallas node. RFT transfers on the Dallas node hangs with no errors, need to troubleshoot the issue.
Friday, March 21, 2008
Daily Lab / POC Activities
Extramural:
Reinstalled the MonaLisa service agents on Dallas, Tarrant, and Atlanta using the standard install version 1.8.6. The VDT installations of MonaLisa have been removed to simplify the installation document.
Assisted Jeremy with installing and configuring MonaLisa on the Pittsburgh grid node. Pittsburgh is currently on-line and showing a status in the MonaLisa map.
Documented the current state of the grid with screen shots.
Reinstalled the MonaLisa service agents on Dallas, Tarrant, and Atlanta using the standard install version 1.8.6. The VDT installations of MonaLisa have been removed to simplify the installation document.
Assisted Jeremy with installing and configuring MonaLisa on the Pittsburgh grid node. Pittsburgh is currently on-line and showing a status in the MonaLisa map.
Documented the current state of the grid with screen shots.
Thursday, March 20, 2008
Daily Lab / POC Activities
Extramural:
The Pittsburgh node was able to transfer date from Atlanta and Tarrant. Jeremy is going to verify firewall settings with the Firewall administrators because Atlanta cannot transfer data from the Pittsburgh node. Data transfers are working fine from the Tarrant node.
- Researched the Replica Location Service
- Assisted Pittsburgh Engineer with Grid Node installation and testing.
The Pittsburgh node was able to transfer date from Atlanta and Tarrant. Jeremy is going to verify firewall settings with the Firewall administrators because Atlanta cannot transfer data from the Pittsburgh node. Data transfers are working fine from the Tarrant node.
Wednesday, March 19, 2008
Daily Lab / POC Activities
Extramural:
If you select "no" during the certificate installation portion of the install, VDT will not install the default trusted certificates. This is OK because the CA setup file shipped by HealthGrid, will create all required directories and install the certificates to the correct locations. If this method is used, the GRID_SECURITY variable located in /opt/vdt/setup.sh needs to be modified to include the correct directory location. (/etc/grid-security) This needs to be done before vdt-control --on is run.
- Reinstalled VDT on Lab 1001.
If you select "no" during the certificate installation portion of the install, VDT will not install the default trusted certificates. This is OK because the CA setup file shipped by HealthGrid, will create all required directories and install the certificates to the correct locations. If this method is used, the GRID_SECURITY variable located in /opt/vdt/setup.sh needs to be modified to include the correct directory location. (/etc/grid-security) This needs to be done before vdt-control --on is run.
- Modified the Trusted Authority setup of the VDT installation document based on the recent VDT installations.
- Installed and tested AccessGrid with Ken and Tom
PHGrid News
Jeremy Espino at the University of Pittsburgh reported that their network security people approved and set up the firewall policies to allow their grid node to interoperate on the PH Research Informatics Grid.
The U. Pitt node comprises the 4th node on this grid.
The U. Pitt node comprises the 4th node on this grid.
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